CNMF-E parameter explorer

Move the sliders to change parameters of CNMF-E and view how footprints of extracted cells change. The cell diameter should be set by measuring cell sizes in the field of view and other parameters should be modified as described here. Colors indicate maximum correlation with traces of other cells. Red cells are those that are highly correlated with at least one other cell.

Parameters

Cell diameter: 3
Gaussian kernel size: 1
Minimum peak-to-noise ratio: 8
Minimum correlation: 0.60